Transcript: ENSDART00000019350.9 nup58-201

Description

nucleoporin 58 [Source:ZFIN;Acc:ZDB-GENE-040426-2326]

Gene Synonyms

nupl1, wu:fc45d07, wu:fi14f12, wu:fi21d10, zgc:113941, zgc:85711

Location

About this transcript

This transcript has 13 exons, is annotated with 16 domains and features, is associated with 602 variant alleles and maps to 271 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000019350.9	nup58-201	2587	567aa	ENSDARP00000022894.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000126395.2	nup58-202	2337	437aa	ENSDARP00000108245.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000144336.3	nup58-204	1177	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000135757.2	nup58-203	715	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,587 bps, Translation length: 567 residues

Version

ENSDART00000019350.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.