Transcript: ENSDART00000019140.12 rorab-201

Description

RAR-related orphan receptor A, paralog b [Source:ZFIN;Acc:ZDB-GENE-040426-855]

Gene Synonyms

NR1F1-A, RORalpha-A, rora1, wu:fq24g04, zgc:55954

Location

About this transcript

This transcript has 10 exons, is annotated with 32 domains and features, is associated with 1183 variant alleles and maps to 213 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000019140.12	rorab-201	4174	474aa	ENSDARP00000015111.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJF4-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000173723.2	rorab-202	4332	526aa	ENSDARP00000142860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSP3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 4,174 bps, Translation length: 474 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: F1QJF4

Version

ENSDART00000019140.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.