Transcript: ENSDART00000019078.5 lhx8a-201

Description

LIM homeobox 8a [Source:ZFIN;Acc:ZDB-GENE-031008-2]

Gene Synonyms

cb875, fk78g12, lhx7, lhx8, wu:fk78g12

Location

About this transcript

This transcript has 8 exons, is annotated with 24 domains and features, is associated with 175 variant alleles and maps to 278 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000019078.5	lhx8a-201	1508	332aa	ENSDARP00000028001.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PMV8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144982.2	lhx8a-203	1052	237aa	ENSDARP00000120611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NIJ6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132313.2	lhx8a-202	631	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,508 bps, Translation length: 332 residues

Version

ENSDART00000019078.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.