Transcript: ENSDART00000019059.9 lmx1a-201

Description

LIM homeobox transcription factor 1, alpha [Source:ZFIN;Acc:ZDB-GENE-041014-332]

Gene Synonyms

si:ch211-260g14.3

Location

About this transcript

This transcript has 7 exons, is annotated with 27 domains and features, is associated with 465 variant alleles and maps to 301 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000019059.9	lmx1a-201	1374	366aa	ENSDARP00000006532.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RI65	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139609.2	lmx1a-202	615	147aa	ENSDARP00000123281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146292.3	lmx1a-203	534	118aa	ENSDARP00000119321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,374 bps, Translation length: 366 residues

Version

ENSDART00000019059.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.