Transcript: ENSDART00000018461.10 vmp1-201

Description

vacuole membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8733]

Gene Synonyms

tmem49, wu:fb05d08, wu:fb92g08, zgc:77153

Location

About this transcript

This transcript has 12 exons, is annotated with 27 domains and features, is associated with 569 variant alleles and maps to 188 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000018461.10	vmp1-201	2135	406aa	ENSDARP00000004153.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q6C7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000111753.3	vmp1-202	2060	406aa	ENSDARP00000098034.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q6C7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000129155.3	vmp1-203	709	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,135 bps, Translation length: 406 residues

Version

ENSDART00000018461.10

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.