Transcript: ENSDART00000018347.8 cab39l1-201

Description

calcium binding protein 39, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2897]

Gene Synonyms

cab39, wu:fb72b01, wu:fi37c08, zgc:55451

Location

About this transcript

This transcript has 9 exons, is annotated with 6 domains and features, is associated with 192 variant alleles and maps to 250 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000018347.8	cab39l1-201	4424	343aa	ENSDARP00000014384.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T8Z7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186246.1	cab39l1-202	1035	343aa	ENSDARP00000153389.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T8Z7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 4,424 bps, Translation length: 343 residues

Version

ENSDART00000018347.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.