Transcript: ENSDART00000017756.9 ctsl.1-201

Description

cathepsin L.1 [Source:ZFIN;Acc:ZDB-GENE-040718-61]

Gene Synonyms

ctslc, zgc:92089

Location

Chromosome 17: 27,456,804-27,461,230 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 24 domains and features, is associated with 321 variant alleles and maps to 265 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000003902.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000017756.9	ctsl.1-201	1434	334aa	ENSDARP00000021632.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHT0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181461.1	ctsl.1-205	1817	334aa	ENSDARP00000151690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHT0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180178.1	ctsl.1-204	1655	334aa	ENSDARP00000146326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHT0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000155591.2	ctsl.1-202	543	127aa	ENSDARP00000129742.1	Nonsense mediated decay	-	-
ENSDART00000156158.2	ctsl.1-203	642	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,434 bps, Translation length: 334 residues

Version

ENSDART00000017756.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000017756.9 ctsl.1-201

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Transcript: ENSDART00000017756.9 ctsl.1-201

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