Transcript: ENSDART00000017668.10 ptbp1a-201

Description

polypyrimidine tract binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050522-492]

Gene Synonyms

brb, brom bones, hnRNP I, ptbp1, wu:fb99f12, zgc:110689

Location

About this transcript

This transcript has 16 exons, is annotated with 29 domains and features, is associated with 256 variant alleles and maps to 295 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000017668.10	ptbp1a-201	3855	574aa	ENSDARP00000011705.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q503D3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141564.2	ptbp1a-202	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,855 bps, Translation length: 574 residues

Version

ENSDART00000017668.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.