Transcript: ENSDART00000017359.8 sfpq-201

Description

splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]

Gene Synonyms

hm:zeh0027, wis, wu:fa11h12, wu:fd10f03, zgc:85935

Location

About this transcript

This transcript has 10 exons, is annotated with 42 domains and features, is associated with 270 variant alleles and maps to 161 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000017359.8	sfpq-201	2424	638aa	ENSDARP00000020522.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1PEX4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000123647.3	sfpq-202	688	115aa	ENSDARP00000126326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151438.3	sfpq-204	2273	607aa	ENSDARP00000126177.1	Nonsense mediated decay	-	-
ENSDART00000134873.3	sfpq-203	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,424 bps, Translation length: 638 residues

Version

ENSDART00000017359.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.