Transcript: ENSDART00000017188.8 ncl-201

Description

nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]

Gene Synonyms

fa12d03, wu:fa12d03, zgc:152810

Location

Chromosome 22: 36,673,699-36,690,742 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 43 domains and features, is associated with 294 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000002710.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000124698.4	ncl-202	3219	704aa	ENSDARP00000109546.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JLQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000017188.8	ncl-201	2826	705aa	ENSDARP00000013803.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R6L6	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000130171.4	ncl-203	2671	387aa	ENSDARP00000111815.2	Nonsense mediated decay	E9QB18	-
ENSDART00000147402.2	ncl-205	710	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000141088.2	ncl-204	456	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,826 bps, Translation length: 705 residues

Version

ENSDART00000017188.8

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000017188.8 ncl-201

Summary

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Transcript: ENSDART00000017188.8 ncl-201

Summary

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