Transcript: ENSDART00000017173.10 dmbx1a-201

Description

diencephalon/mesencephalon homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-020117-1]

Gene Synonyms

dmbx1, etID309750.1, mbx, otx3, zMbx1

Location

Chromosome 2: 10,185,330-10,192,487 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 21 domains and features, is associated with 141 variant alleles and maps to 213 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000009922.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000128535.3	dmbx1a-202	2663	383aa	ENSDARP00000106835.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000189122.1	dmbx1a-203	4226	383aa	ENSDARP00000148506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000017173.10	dmbx1a-201	2731	388aa	ENSDARP00000027577.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JI10-1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,731 bps, Translation length: 388 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8JI10

Version

ENSDART00000017173.10

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000017173.10 dmbx1a-201

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Transcript: ENSDART00000017173.10 dmbx1a-201

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