Transcript: ENSDART00000017153.8 hps4-201

Description

HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1068]

Location

About this transcript

This transcript has 13 exons, is annotated with 14 domains and features, is associated with 639 variant alleles and maps to 188 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000017153.8	hps4-201	2372	647aa	ENSDARP00000012323.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190677.1	hps4-202	3178	647aa	ENSDARP00000155304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,372 bps, Translation length: 647 residues

Version

ENSDART00000017153.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.