Transcript: ENSDART00000016303.6 IRX2-203

Description

iroquois homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1446]

Location

Chromosome 16: 558,688-563,235 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 17 domains and features, is associated with 142 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000001785.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000016303.6	IRX2-203	2295	432aa	ENSDARP00000016693.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000183394.1	IRX2-204	6520	418aa	ENSDARP00000152082.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000148452.2	IRX2-202	499	101aa	ENSDARP00000123856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000148602.2	IRX2-201	968	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,295 bps, Translation length: 432 residues

Version

ENSDART00000016303.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000016303.6 IRX2-203

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Transcript: ENSDART00000016303.6 IRX2-203

Summary

About Us

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