Transcript: ENSDART00000015240.9 CAPNS1-204

Description

calpain, small subunit 1 a [Source:ZFIN;Acc:ZDB-GENE-030113-3]

Location

Chromosome 5: 36,655,522-36,665,694 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 11 domains and features, is associated with 423 variant alleles and maps to 133 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000035329.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000131339.3	CAPNS1-206	1287	216aa	ENSDARP00000119693.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LYC9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000015240.9	CAPNS1-204	1259	216aa	ENSDARP00000020352.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LYC9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000125653.3	CAPNS1-201	1029	156aa	ENSDARP00000107632.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q568A3	-
ENSDART00000141440.2	CAPNS1-203	739	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000144932.3	CAPNS1-205	671	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000140676.2	CAPNS1-202	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,259 bps, Translation length: 216 residues

Version

ENSDART00000015240.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000015240.9 CAPNS1-204

Summary

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Transcript: ENSDART00000015240.9 CAPNS1-204

Summary

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