Transcript: ENSDART00000013453.10 fam20b-201

Description

FAM20B glycosaminoglycan xylosylkinase [Source:ZFIN;Acc:ZDB-GENE-040724-125]

Gene Synonyms

si:ch211-195o19.3, unm b1127, unm_b1127, zgc:136944

Location

Chromosome 20: 15,857,041-15,922,431 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 1078 variant alleles and maps to 220 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000008573.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000013453.10	fam20b-201	2221	409aa	ENSDARP00000018976.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T6R8 Q5RH51	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000189421.1	fam20b-206	2045	409aa	ENSDARP00000146564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T6R8 Q5RH51	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152354.2	fam20b-202	827	153aa	ENSDARP00000126968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152828.3	fam20b-205	764	124aa	ENSDARP00000126637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152357.3	fam20b-203	683	105aa	ENSDARP00000126917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152412.2	fam20b-204	682	119aa	ENSDARP00000126738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 2,221 bps, Translation length: 409 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RH51

Version

ENSDART00000013453.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000013453.10 fam20b-201

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Transcript: ENSDART00000013453.10 fam20b-201

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