Transcript: ENSDART00000012391.8 cabp1a-201

Description

calcium binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-041010-36]

Gene Synonyms

cabp1, cabp1b, zgc:101878

Location

About this transcript

This transcript has 7 exons, is annotated with 18 domains and features, is associated with 297 variant alleles and maps to 134 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000012391.8	cabp1a-201	996	186aa	ENSDARP00000016102.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XJJ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181310.1	cabp1a-202	1926	379aa	ENSDARP00000145577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PX62	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 996 bps, Translation length: 186 residues

Version

ENSDART00000012391.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.