Transcript: ENSDART00000011876.8 sycp1-201

Description

synaptonemal complex protein 1 [Source:ZFIN;Acc:ZDB-GENE-040910-6]

Location

About this transcript

This transcript has 32 exons, is annotated with 24 domains and features, is associated with 378 variant alleles and maps to 239 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000011876.8	sycp1-201	3440	1000aa	ENSDARP00000006089.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QYS1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000124524.3	sycp1-202	560	187aa	ENSDARP00000111971.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QEF6	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 32, Coding exons: 31, Transcript length: 3,440 bps, Translation length: 1,000 residues

Version

ENSDART00000011876.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.