Transcript: ENSDART00000010494.10 fgfr1op-201

Description

FGFR1 oncogene partner [Source:ZFIN;Acc:ZDB-GENE-090417-1]

Gene Synonyms

zgc:86782

Location

Chromosome 20: 30,578,967-30,610,170 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 20 domains and features, is associated with 787 variant alleles and maps to 233 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000003058.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000010494.10	fgfr1op-201	1668	511aa	ENSDARP00000011529.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000159485.2	fgfr1op-205	2319	487aa	ENSDARP00000139051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IW74	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000153066.2	fgfr1op-204	695	213aa	ENSDARP00000127161.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JA96	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000137007.2	fgfr1op-203	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000131422.2	fgfr1op-202	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 1,668 bps, Translation length: 511 residues

Version

ENSDART00000010494.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000010494.10 fgfr1op-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000010494.10 fgfr1op-201

Summary

About Us

Get help

Our sister sites

Follow us