Transcript: ENSDART00000008402.9 sart3-201

Description

spliceosome associated factor 3, U4/U6 recycling protein [Source:ZFIN;Acc:ZDB-GENE-040724-10]

Gene Synonyms

earl grey, egy, p110, si:ch211-191d15.4, unm_sm471, wu:fc51h03

Location

About this transcript

This transcript has 19 exons, is annotated with 43 domains and features, is associated with 385 variant alleles and maps to 234 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000008402.9	sart3-201	4657	951aa	ENSDARP00000004923.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6ZM52	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000124545.3	sart3-202	3020	951aa	ENSDARP00000106223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TR34 B3DJT0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 4,657 bps, Translation length: 951 residues

Version

ENSDART00000008402.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.