Transcript: ENSDART00000006724.12 smarcd3b-201

Description

SWI/SNF related BAF chromatin remodeling complex subunit D3b [Source:ZFIN;Acc:ZDB-GENE-080509-2]

Gene Synonyms

smarcd3, smarcd3l

Location

About this transcript

This transcript has 15 exons, is annotated with 14 domains and features, is associated with 7 variant alleles and maps to 69 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000174087.2	smarcd3b-203	4256	476aa	ENSDARP00000143064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2KL77	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000006724.12	smarcd3b-201	1533	510aa	ENSDARP00000015411.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9Q7X8	-
ENSDART00000174300.2	smarcd3b-204	1417	413aa	ENSDARP00000143200.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000150146.2	smarcd3b-202	533	178aa	ENSDARP00000123933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 1,533 bps, Translation length: 510 residues

Version

ENSDART00000006724.12

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]