Transcript: ENSDART00000006538.8 otx2a-201

Description

orthodenticle homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-27]

Gene Synonyms

otx1a, otx1l, otx3

Location

About this transcript

This transcript has 4 exons, is annotated with 31 domains and features, is associated with 348 variant alleles and maps to 186 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000006538.8	otx2a-201	1629	338aa	ENSDARP00000013327.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90267	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000150420.2	otx2a-202	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,629 bps, Translation length: 338 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q90267

Version

ENSDART00000006538.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.