Transcript: ENSDART00000005901.9 plod2-201

Description

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 [Source:ZFIN;Acc:ZDB-GENE-070326-1]

Gene Synonyms

lh2, zgc:101868

Location

About this transcript

This transcript has 20 exons, is annotated with 16 domains and features, is associated with 934 variant alleles and maps to 209 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000005901.9	plod2-201	3370	754aa	ENSDARP00000012147.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4U7F9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000106488.2	plod2-202	3307	733aa	ENSDARP00000097266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4U7F8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000128182.3	plod2-203	1190	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000140035.2	plod2-204	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 3,370 bps, Translation length: 754 residues

Version

ENSDART00000005901.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.