Transcript: ENSDART00000005740.11 mef2aa-201

Description

myocyte enhancer factor 2aa [Source:ZFIN;Acc:ZDB-GENE-990415-163]

Gene Synonyms

etID309779.18, mef2a, wu:fd19d02

Location

Chromosome 18: 23,249,519-23,356,077 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 26 domains and features, is associated with 1942 variant alleles and maps to 361 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000031756.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148106.3	mef2aa-205	2113	458aa	ENSDARP00000116960.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXH6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000181762.1	mef2aa-207	2124	467aa	ENSDARP00000157383.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000171594.2	mef2aa-206	2103	460aa	ENSDARP00000139238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IRM3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000190072.1	mef2aa-209	1963	459aa	ENSDARP00000156891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000185014.1	mef2aa-208	1873	459aa	ENSDARP00000154945.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000124818.4	mef2aa-202	1844	524aa	ENSDARP00000110624.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000005740.11	mef2aa-201	1736	488aa	ENSDARP00000021792.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000147446.2	mef2aa-204	1733	487aa	ENSDARP00000123273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000143977.3	mef2aa-203	606	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,736 bps, Translation length: 488 residues

Version

ENSDART00000005740.11

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000005740.11 mef2aa-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000005740.11 mef2aa-201

Summary

About Us

Get help

Our sister sites

Follow us