Transcript: ENSDART00000005676.6 sox9a-201

Description

SRY-box transcription factor 9a [Source:ZFIN;Acc:ZDB-GENE-001103-1]

Gene Synonyms

jef, jellyfish, wu:fj17b12, zgc:111921

Location

About this transcript

This transcript has 3 exons, is annotated with 20 domains and features, is associated with 207 variant alleles and maps to 188 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000005676.6	sox9a-201	1784	462aa	ENSDARP00000006945.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9DFH2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000127937.3	sox9a-202	992	247aa	ENSDARP00000106978.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,784 bps, Translation length: 462 residues

Version

ENSDART00000005676.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.