Transcript: ENSDART00000005641.6 lhx1a-201

Description

LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]

Location

About this transcript

This transcript has 5 exons, is annotated with 29 domains and features, is associated with 140 variant alleles and maps to 340 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000005641.6	lhx1a-201	2402	405aa	ENSDARP00000021069.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DGH2 Q90476	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134373.2	lhx1a-202	433	97aa	ENSDARP00000120823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,402 bps, Translation length: 405 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q90476

Version

ENSDART00000005641.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.