Transcript: ENSDART00000004816.11 zgc:110158-201

Description

zgc:110158 [Source:ZFIN;Acc:ZDB-GENE-050522-195]

Location

Chromosome 2: 41,580,789-41,620,112 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 19 domains and features, is associated with 1204 variant alleles and maps to 157 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056490.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000170171.3	zgc:110158-205	1595	385aa	ENSDARP00000134550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IGD1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138822.3	zgc:110158-203	6467	265aa	ENSDARP00000118681.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000004816.11	zgc:110158-201	3269	293aa	ENSDARP00000018827.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000155577.3	zgc:110158-204	1520	357aa	ENSDARP00000128426.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q503T8	-
ENSDART00000137476.2	zgc:110158-202	231	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 3,269 bps, Translation length: 293 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000004816.11

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000004816.11 zgc:110158-201

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Transcript: ENSDART00000004816.11 zgc:110158-201

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