Transcript: ENSDART00000004739.8 nup50-201

Description

nucleoporin 50 [Source:ZFIN;Acc:ZDB-GENE-030131-1689]

Gene Synonyms

wu:fa56e03, wu:fb78a08

Location

Chromosome 4: 74,943,111-74,961,852 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 20 domains and features, is associated with 443 variant alleles and maps to 157 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000017454.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000004739.8	nup50-201	2357	422aa	ENSDARP00000017103.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TP02	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000158533.3	nup50-203	3644	422aa	ENSDARP00000137742.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TP02	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000192755.1	nup50-205	2092	422aa	ENSDARP00000155325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TP02	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000174082.2	nup50-204	193	20aa	ENSDARP00000143143.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148575.3	nup50-202	1744	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 2,357 bps, Translation length: 422 residues

Version

ENSDART00000004739.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000004739.8 nup50-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000004739.8 nup50-201

Summary

About Us

Get help

Our sister sites

Follow us