Transcript: ENSDART00000004222.9 plxnc1-201

Description

plexin C1 [Source:ZFIN;Acc:ZDB-GENE-030131-1620]

Gene Synonyms

fb76c04, si:dkeyp-90a8.2, wu:fb76c04

Location

Chromosome 4: 18,281,954-18,304,932 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 4 domains and features, is associated with 904 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000015278.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135735.2	plxnc1-202	3171	1056aa	ENSDARP00000115802.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RGW1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000004222.9	plxnc1-201	3265	464aa	ENSDARP00000011546.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000189084.1	plxnc1-203	1963	387aa	ENSDARP00000156547.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 3,265 bps, Translation length: 464 residues

Version

ENSDART00000004222.9

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000004222.9 plxnc1-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000004222.9 plxnc1-201

Summary

About Us

Get help

Our sister sites

Follow us