Transcript: ENSDART00000003891.9 jupa-201

Description

junction plakoglobin a [Source:ZFIN;Acc:ZDB-GENE-991207-22]

Gene Synonyms

cb80, danPG, fb11b06, gamma-catenin, jup, plakoglobin, wu:fb11b06

Location

Chromosome 11: 11,719,575-11,781,232 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 41 domains and features, is associated with 1493 variant alleles and maps to 222 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000070787.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000003891.9	jupa-201	3272	729aa	ENSDARP00000026915.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180372.1	jupa-204	6556	729aa	ENSDARP00000156233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000081018.5	jupa-202	3830	729aa	ENSDARP00000075461.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146512.2	jupa-203	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 16, Coding exons: 14, Transcript length: 3,272 bps, Translation length: 729 residues

Version

ENSDART00000003891.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000003891.9 jupa-201

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Transcript: ENSDART00000003891.9 jupa-201

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