Transcript: ENSDART00000003583.8 lmo3-201

Description

LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]

Gene Synonyms

lmo3b, zgc:110149

Location

Chromosome 4: 12,615,836-12,679,293 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 49 domains and features, is associated with 438 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000008720.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112860.3	lmo3-202	883	167aa	ENSDARP00000098627.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0R1F5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000003583.8	lmo3-201	2069	145aa	ENSDARP00000015268.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q503U0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181201.1	lmo3-205	1241	145aa	ENSDARP00000152478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q503U0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134362.3	lmo3-204	807	81aa	ENSDARP00000122563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133767.2	lmo3-203	340	38aa	ENSDARP00000119444.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,069 bps, Translation length: 145 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q503U0

Version

ENSDART00000003583.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000003583.8 lmo3-201

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Transcript: ENSDART00000003583.8 lmo3-201

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