Transcript: ENSDART00000003001.8 rpl23a-201

Description

ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]

Gene Synonyms

wu:fa93f05, wu:fj20e05, zgc:110139

Location

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 39 variant alleles and maps to 95 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000003001.8	rpl23a-201	563	155aa	ENSDARP00000006624.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGI3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146573.2	rpl23a-204	709	152aa	ENSDARP00000118814.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000193273.1	rpl23a-205	483	147aa	ENSDARP00000149232.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000141001.2	rpl23a-203	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000134939.3	rpl23a-202	869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 563 bps, Translation length: 155 residues

Version

ENSDART00000003001.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.