Transcript: ENSDART00000002851.9 kdm7aa-201

Description

lysine (K)-specific demethylase 7Aa [Source:ZFIN;Acc:ZDB-GENE-030131-9829]

Gene Synonyms

cb414, jhdm1da, kdm7a, sb:cb414, si:dkey-105o6.2, zgc:123306

Location

Chromosome 4: 22,492,355-22,519,525 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 21 domains and features, is associated with 551 variant alleles and maps to 199 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000018111.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000123801.3	kdm7aa-202	841	188aa	ENSDARP00000111845.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000186258.1	kdm7aa-204	3094	837aa	ENSDARP00000147148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RKB3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000130409.3	kdm7aa-203	2628	875aa	ENSDARP00000104491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RHD1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000002851.9	kdm7aa-201	1848	613aa	ENSDARP00000012964.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 1,848 bps, Translation length: 613 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000002851.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000002851.9 kdm7aa-201

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Transcript: ENSDART00000002851.9 kdm7aa-201

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