Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SETDB1 ENSDARG00000099021

.

Description

SET domain bifurcated histone lysine methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]

Location

Chromosome 16: 21,891,811-21,917,361 reverse strand.

GRCz11:CM002900.2

About this gene

This gene has 5 transcripts (splice variants), 223 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000165824.2	SETDB1-203	4343	1214aa	ENSDARP00000136505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1NBP0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000170634.2	SETDB1-205	3729	1242aa	ENSDARP00000140273.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IUW4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000165849.2	SETDB1-204	838	279aa	ENSDARP00000140198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000171818.2	SETDB1-202	732	100aa	ENSDARP00000140486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000165522.2	SETDB1-201	811	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

.

Summary

.

.