Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: pcdh11 ENSDARG00000098652

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Description

protocadherin 11 [Source:ZFIN;Acc:ZDB-GENE-140106-21]

Gene Synonyms

zmp:0000001061

Location

Chromosome 14: 27,120,406-27,297,123 reverse strand.

GRCz11:CM002898.2

About this gene

This gene has 2 transcripts (splice variants), 197 orthologues and 49 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000159727.2	pcdh11-201	4575	1097aa	ENSDARP00000137646.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ITD9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173423.2	pcdh11-202	3274	1009aa	ENSDARP00000142158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LFY2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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