Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: OTX1 ENSDARG00000094992

.

Description

orthodenticle homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-400]

Location

Chromosome 17: 24,318,753-24,324,415 forward strand.

GRCz11:CM002901.2

About this gene

This gene has 2 transcripts (splice variants), 185 orthologues, 56 paralogues and is associated with 12 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000064083.4	OTX1-201	2513	323aa	ENSDARP00000064082.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q91994	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179858.1	OTX1-202	2083	323aa	ENSDARP00000157164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q91994	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

.

Summary

.

.