Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: smc6 ENSDARG00000091821

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Description

structural maintenance of chromosomes 6 [Source:ZFIN;Acc:ZDB-GENE-110303-1]

Location

Chromosome 17: 6,667,441-6,746,046 forward strand.

GRCz11:CM002901.2

About this gene

This gene has 4 transcripts (splice variants), 60 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000180381.1	smc6-204	3829	1111aa	ENSDARP00000154579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RWF4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000123503.3	smc6-201	3742	1082aa	ENSDARP00000110583.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F8G9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000156140.3	smc6-203	3592	1093aa	ENSDARP00000129417.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGQ9	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000155781.2	smc6-202	505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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