Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PHOX2B ENSDARG00000091029

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Description

paired like homeobox 2Bb [Source:ZFIN;Acc:ZDB-GENE-050407-3]

Location

Chromosome 14: 17,064,126-17,072,736 reverse strand.

GRCz11:CM002898.2

About this gene

This gene has 3 transcripts (splice variants), 194 orthologues, 56 paralogues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000163766.2	PHOX2B-201	2197	284aa	ENSDARP00000130156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5I7G4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000106333.5	PHOX2B-203	3956	284aa	ENSDARP00000097111.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5I7G4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170277.2	PHOX2B-202	1004	206aa	ENSDARP00000137086.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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