Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: zgc:174895 ENSDARG00000079416

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Description

zgc:174895 [Source:ZFIN;Acc:ZDB-GENE-070928-41]

Location

Chromosome 15: 15,456,536-15,460,133 forward strand.

GRCz11:CM002899.2

About this gene

This gene has 3 transcripts (splice variants) and 80 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109004.5	zgc:174895-201	1850	200aa	ENSDARP00000099844.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QWW2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000155708.2	zgc:174895-202	984	203aa	ENSDARP00000129362.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGK5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000156835.3	zgc:174895-203	915	186aa	ENSDARP00000128863.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WF59	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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