Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: si:ch211-247j9.1 ENSDARG00000079283

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Description

si:ch211-247j9.1 [Source:ZFIN;Acc:ZDB-GENE-091204-212]

Location

Chromosome 21: 32,332,616-32,349,711 forward strand.

GRCz11:CM002905.2

About this gene

This gene has 3 transcripts (splice variants), 59 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000161723.2	si:ch211-247j9.1-203	6231	622aa	ENSDARP00000132315.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IDX6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000154105.3	si:ch211-247j9.1-202	6313	571aa	ENSDARP00000128607.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000110137.5	si:ch211-247j9.1-201	2127	621aa	ENSDARP00000102953.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDL0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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