Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: sh3bp1 ENSDARG00000078119

.

Description

SH3-domain binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-121128-2]

Location

Chromosome 12: 19,205,086-19,232,997 forward strand.

GRCz11:CM002896.2

About this gene

This gene has 2 transcripts (splice variants), 202 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000186573.1	sh3bp1-202	2085	694aa	ENSDARP00000148307.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q349	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000110415.4	sh3bp1-201	2819	670aa	ENSDARP00000097940.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FFF8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.