Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SMAD4 ENSDARG00000075226

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Description

SMAD family member 4a [Source:ZFIN;Acc:ZDB-GENE-990603-8]

Location

Chromosome 10: 573,667-590,083 forward strand.

GRCz11:CM002894.2

About this gene

This gene has 3 transcripts (splice variants), 210 orthologues, 12 paralogues and is associated with 35 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110384.4	SMAD4-201	2701	547aa	ENSDARP00000097763.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000129856.3	SMAD4-202	1518	505aa	ENSDARP00000112470.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B1PS59	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000180167.1	SMAD4-203	1074	222aa	ENSDARP00000154736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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