Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: nkx2.4a ENSDARG00000075107

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Description

NK2 homeobox 4a [Source:ZFIN;Acc:ZDB-GENE-030131-6336]

Gene Synonyms

fi48a12, wu:fi48a12, zgc:171531

Location

Chromosome 17: 42,095,247-42,097,267 reverse strand.

GRCz11:CM002901.2

About this gene

This gene has 2 transcripts (splice variants), 175 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110871.4	nkx2.4a-201	1684	345aa	ENSDARP00000104286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DFT3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000155484.2	nkx2.4a-202	1350	336aa	ENSDARP00000128532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DG22	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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