Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL9A1 ENSDARG00000073699

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Description

collagen, type IX, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-080721-25]

Location

Chromosome 11: 11,274,940-11,301,357 reverse strand.

GRCz11:CM002895.2

About this gene

This gene has 2 transcripts (splice variants), 189 orthologues and 52 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000113311.4	COL9A1-201	2729	687aa	ENSDARP00000097619.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180466.1	COL9A1-202	2293	717aa	ENSDARP00000145851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

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Summary

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