Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: hoxc3a ENSDARG00000070339

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Description

homeobox C3a [Source:NCBI gene;Acc:30421]

Gene Synonyms

HOX-114, hox[zf-114], zgc:110503

Location

Chromosome 23: 36,087,219-36,149,371 forward strand.

GRCz11:CM002907.2

About this gene

This gene has 5 transcripts (splice variants), 144 orthologues and 53 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154825.3	hoxc3a-204	1027	257aa	ENSDARP00000129398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGP0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000082473.6	hoxc3a-201	2836	250aa	ENSDARP00000076908.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BE60	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000184448.1	hoxc3a-205	1697	250aa	ENSDARP00000154659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BE60	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000128533.4	hoxc3a-202	520	134aa	ENSDARP00000129026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WFM2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137507.2	hoxc3a-203	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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