Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: pcdh9 ENSDARG00000063264

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Description

protocadherin 9 [Source:ZFIN;Acc:ZDB-GENE-091015-1]

Gene Synonyms

si:ch211-165a18.1

Location

Chromosome 6: 4,872,883-4,984,243 forward strand.

GRCz11:CM002890.2

About this gene

This gene has 3 transcripts (splice variants), 207 orthologues and 49 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000186730.1	pcdh9-203	3942	1054aa	ENSDARP00000145020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBE3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000092290.6	pcdh9-201	3887	1054aa	ENSDARP00000086722.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBE3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151674.3	pcdh9-202	3753	1012aa	ENSDARP00000125820.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ISE5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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