Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ctsf ENSDARG00000063095

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Description

cathepsin F [Source:ZFIN;Acc:ZDB-GENE-030131-9831]

Gene Synonyms

cb420, sb:cb420, zgc:153093

Location

Chromosome 14: 7,140,997-7,164,646 forward strand.

GRCz11:CM002898.2

About this gene

This gene has 3 transcripts (splice variants), 385 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000170994.2	ctsf-202	2884	473aa	ENSDARP00000132041.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RE14	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000129898.3	ctsf-201	2371	473aa	ENSDARP00000112297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RE14	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172483.2	ctsf-203	857	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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