Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: si:dkey-220f10.4 ENSDARG00000062902

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Description

si:dkey-220f10.4 [Source:ZFIN;Acc:ZDB-GENE-030131-9651]

Location

Chromosome 12: 20,618,336-20,625,630 forward strand.

GRCz11:CM002896.2

About this gene

This gene has 4 transcripts (splice variants), 171 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000084007.7	si:dkey-220f10.4-201	1771	556aa	ENSDARP00000078442.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8C0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000091452.6	si:dkey-220f10.4-202	1671	556aa	ENSDARP00000085885.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8C0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142996.2	si:dkey-220f10.4-204	684	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000139534.3	si:dkey-220f10.4-203	532	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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