Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: cntn3a.1 ENSDARG00000062880

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Description

contactin 3a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-081030-10]

Gene Synonyms

cntn3a, si:ch211-247h9.1

Location

Chromosome 23: 11,669,109-11,861,393 forward strand.

GRCz11:CM002907.2

About this gene

This gene has 3 transcripts (splice variants), 65 orthologues and 86 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000091416.7	cntn3a.1-201	3709	1028aa	ENSDARP00000085849.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQK1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131355.3	cntn3a.1-202	3389	998aa	ENSDARP00000121904.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P8D9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146961.2	cntn3a.1-203	610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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