Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: hoxd3a ENSDARG00000059280

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Description

homeobox D3a [Source:NCBI gene;Acc:30349]

Gene Synonyms

Z-56, hoxd3, im:7144208

Location

Chromosome 9: 1,937,049-1,959,917 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 4 transcripts (splice variants), 193 orthologues and 53 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146131.2	hoxd3a-203	1970	396aa	ENSDARP00000120633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O42370	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000082359.5	hoxd3a-201	2567	396aa	ENSDARP00000093704.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O42370	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190712.1	hoxd3a-204	1919	396aa	ENSDARP00000156094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O42370	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138730.2	hoxd3a-202	480	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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