Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: otpb ENSDARG00000058379

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Description

orthopedia homeobox b [Source:NCBI gene (formerly Entrezgene);Acc:30316]

Location

Chromosome 5: 51,615,025-51,619,742 reverse strand.

GRCz11:CM002889.2

About this gene

This gene has 3 transcripts (splice variants), 123 orthologues, 56 paralogues and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134606.3	otpb-202	1825	328aa	ENSDARP00000122985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000188537.1	otpb-203	3576	302aa	ENSDARP00000148248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000081249.5	otpb-201	1845	315aa	ENSDARP00000075692.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DGH9-1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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